STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43610.1Putative phage tail protein. (412 aa)    
Predicted Functional Partners:
EDM44468.1
Cell wall surface anchor family protein; COG5651 PPE-repeat proteins.
  
     0.753
EDM44948.1
Lipase/acylhydrolase family protein; COG2755 Lysophospholipase L1 and related esterases.
   
 0.725
EDM43609.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
  
 
0.670
EDM44725.1
Hypothetical protein.
  
  
  0.638
EDM43962.1
Outer membrane protein.
  
  0.584
EDM42925.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
  0.584
EDM43221.1
Outer membrane protein; COG2831 Hemolysin activation/secretion protein.
  
  0.584
EDM44214.1
COG5651 PPE-repeat proteins.
  
  
  0.569
EDM43612.1
Putative hemagglutinin; COG1705 Muramidase (flagellum-specific).
     
 0.545
EDM44819.1
Hypothetical protein; COG3291 FOG: PKD repeat.
  
  
  0.542
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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