STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDM43611.1Putative D-cysteine desulfhydrase (DcyD); COG2515 1-aminocyclopropane-1-carboxylate deaminase. (327 aa)    
Predicted Functional Partners:
EDM43612.1
Putative hemagglutinin; COG1705 Muramidase (flagellum-specific).
      0.903
hemL
HemL; COG0001 Glutamate-1-semialdehyde aminotransferase.
    
  0.879
EDM43791.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
  
  
  0.792
EDM43604.1
(pyruvate) Oxoisovalerate Dehydrogenase Alpha and Beta Fusion; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
     
  0.784
EDM43022.1
Transketolase; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
     
  0.784
EDM43107.1
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
     
  0.784
EDM45213.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
     
  0.770
EDM42940.1
Cystathionine beta-synthase; COG0031 Cysteine synthase.
     
 0.534
EDM44034.1
Cystathionine beta-synthase; COG0031 Cysteine synthase.
     
 0.534
EDM43610.1
Putative phage tail protein.
       0.531
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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