Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43618.1COG4872 Predicted membrane protein. (427 aa)    
Predicted Functional Partners:
EDM43619.1
Hypothetical protein; COG4929 Uncharacterized membrane-anchored protein.
 
     0.954
EDM43617.1
COG4682 Predicted membrane protein.
 
     0.683
EDM45633.1
Hypothetical protein.
  
     0.656
EDM44132.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.535
EDM45071.1
COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats.
  
     0.413
EDM44530.1
COG5337 Spore coat assembly protein.
  
     0.400
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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