STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43626.1Hypothetical protein. (641 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII; COG1344 Flagellin and related hook-associated proteins.
 
     0.732
EDM44675.1
Hypothetical protein.
  
 
  0.664
EDM43780.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.643
EDM44507.1
Hypothetical secreted protein.
    
  0.642
rnhB-2
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
     0.632
EDM44081.1
Ribonuclease Z.
  
     0.627
EDM44392.1
COG3047 Outer membrane protein W.
     
  0.620
EDM43052.1
Hypothetical protein.
  
 
  0.610
EDM43076.1
Hypothetical protein.
  
     0.609
EDM43324.1
Elongation factor Tu; COG0690 Preprotein translocase subunit SecE; Belongs to the SecE/SEC61-gamma family.
  
     0.605
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.