Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDM43646.1COG2957 Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family. (581 aa)    
Predicted Functional Partners:
EDM43630.1
Arginine decarboxylase, biosynthetic; COG1166 Arginine decarboxylase (spermidine biosynthesis).
    
 0.827
EDM43631.1
COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
     
 0.797
EDM43051.1
FG-GAP repeat protein.
  
    0.622
EDM44214.1
COG5651 PPE-repeat proteins.
  
    0.618
EDM45507.1
CHU large protein; mannosidase-related protein.
  
    0.610
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.604
EDM43735.1
Lysyl endopeptidase precursor; COG0495 Leucyl-tRNA synthetase.
  
     0.595
aat
Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.586
EDM44332.1
Amidase-type enzyme; COG0388 Predicted amidohydrolase.
  
 
 0.559
EDM43633.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
 
 0.559
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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