STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43661.1Dolichol-phosphate mannosyltransferase; COG0463 Glycosyltransferases involved in cell wall biogenesis. (246 aa)    
Predicted Functional Partners:
EDM43662.1
COG0044 Dihydroorotase and related cyclic amidohydrolases.
       0.809
EDM43663.1
Hypothetical protein; COG0582 Integrase.
       0.809
EDM43385.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
  0.595
EDM43660.1
Hypothetical protein.
       0.582
EDM43659.1
COG1587 Uroporphyrinogen-III synthase.
       0.547
EDM44847.1
Glycosyl transferase, family 2; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
  0.511
EDM43213.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 
0.484
EDM43860.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 
0.470
thrS
threonine--tRNA ligase (threonine tRNA synthetase); Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
   
 
  0.465
EDM44246.1
Glycosyl transferase, group 2 family protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 
0.433
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.