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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43663.1Hypothetical protein; COG0582 Integrase. (160 aa)    
Predicted Functional Partners:
EDM43661.1
Dolichol-phosphate mannosyltransferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.792
EDM43662.1
COG0044 Dihydroorotase and related cyclic amidohydrolases.
       0.792
EDM43024.1
COG0308 Aminopeptidase N.
  
     0.676
EDM43660.1
Hypothetical protein.
 
     0.665
EDM45144.1
Hypothetical protein.
  
     0.632
EDM44436.1
Hypothetical protein.
  
     0.601
EDM43116.1
Hypothetical protein.
  
     0.601
EDM44038.1
Hypothetical protein.
  
     0.570
EDM44151.1
Hypothetical protein.
  
     0.565
EDM44572.1
Hypothetical protein.
  
     0.560
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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