STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43685.1Hypothetical protein. (143 aa)    
Predicted Functional Partners:
EDM44727.1
Hypothetical protein.
  
     0.664
EDM43245.1
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
 
    0.649
EDM44728.1
Hypothetical protein.
  
     0.544
EDM43220.1
Outer membrane protein; COG1409 Predicted phosphohydrolases.
  
     0.522
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
  0.513
EDM44356.1
Hypothetical protein.
  
    0.484
EDM43869.1
Hypothetical protein; COG0628 Predicted permease.
 
     0.478
EDM43052.1
Hypothetical protein.
  
     0.453
EDM43686.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
       0.430
EDM43569.1
Hypothetical protein.
  
     0.421
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.