Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43745.1Hypothetical protein. (263 aa)    
Predicted Functional Partners:
EDM43746.1
COG0222 Ribosomal protein L7/L12.
 
     0.899
EDM43744.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.825
EDM43660.1
Hypothetical protein.
  
     0.677
EDM43948.1
Hypothetical protein.
  
     0.661
EDM44038.1
Hypothetical protein.
  
     0.649
EDM45144.1
Hypothetical protein.
  
     0.636
EDM44879.1
Hypothetical protein.
  
     0.559
EDM44521.1
Hypothetical protein.
  
     0.549
EDM44841.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.532
EDM45612.1
Hypothetical protein.
  
     0.520
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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