Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43774.1Hypothetical protein; COG0419 ATPase involved in DNA repair. (748 aa)    
Predicted Functional Partners:
EDM45664.1
Membrane fusion efflux protein, putative; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.615
EDM43391.1
COG0845 Membrane-fusion protein.
    
 0.566
EDM45172.1
Hypothetical protein; COG0313 Predicted methyltransferases.
  
     0.550
EDM44138.1
Putative outer membrane lipoprotein precursor; COG1538 Outer membrane protein.
  
  
  0.530
EDM44919.1
COG1538 Outer membrane protein.
  
  
  0.487
EDM45174.1
Transcriptional regulator; COG0784 FOG: CheY-like receiver.
  
     0.465
EDM45173.1
Sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
  
     0.435
pnp
Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.433
EDM44501.1
Hypothetical protein.
  
     0.417
EDM45134.1
Integral membrane protein; COG1988 Predicted membrane-bound metal-dependent hydrolases.
  
     0.415
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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