Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43780.1COG4775 Outer membrane protein/protective antigen OMA87. (860 aa)    
Predicted Functional Partners:
EDM43076.1
Hypothetical protein.
 
  
 0.938
EDM43271.1
TPR repeat protein; COG4105 DNA uptake lipoprotein.
  
 0.905
EDM44310.1
Hypothetical protein.
  
 
   0.890
EDM42828.1
Putative hemin receptor.
  
 
   0.870
EDM45583.1
Outer membrane lipoprotein, putative; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
 0.843
EDM43883.1
Hypothetical protein.
  
 0.843
EDM45058.1
Putative outer membrane protein; COG2067 Long-chain fatty acid transport protein.
  
 
   0.814
EDM44690.1
COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
  
 
   0.792
EDM42935.1
Gliding motility-related protein; possible outer membrane protein.
  
   
 0.767
EDM44364.1
Hypothetical protein; COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog).
  
     0.754
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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