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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43803.1COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). (266 aa)    
Predicted Functional Partners:
EDM43080.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
  
   0.669
EDM43802.1
Putative ATPase, AAA family protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase.
  
    0.587
EDM45332.1
Hypersensitive-induced reaction protein 4; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
   
 0.524
EDM44556.1
SPFH/band 7 domain protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
   
 0.524
EDM45238.1
COG1826 Sec-independent protein secretion pathway components.
   
 
 0.482
tatA
Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.482
ftsH
Putative transmembrane AAA-metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     
 0.428
EDM45490.1
COG0212 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.404
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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