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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43807.1COG4206 Outer membrane cobalamin receptor protein. (1035 aa)    
Predicted Functional Partners:
EDM43806.1
Hypothetical protein.
 
 
   0.984
EDM44233.1
Hypothetical protein.
 
   0.835
EDM43805.1
Hypothetical protein.
       0.698
EDM43809.1
Putative outer membrane receptor protein.
 
 
   0.691
EDM43955.1
BNR repeat, putative.
  
 
   0.659
EDM44654.1
Hypothetical protein; COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N).
  
 
   0.602
EDM43804.1
tRNA/rRNA methyltransferase, TrmH family protein; COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.540
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
    
  0.539
EDM45683.1
Hypothetical protein.
    
  0.539
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
    
  0.539
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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