Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43807.1COG4206 Outer membrane cobalamin receptor protein. (1035 aa)    
Predicted Functional Partners:
EDM43806.1
Hypothetical protein.
 
 
   0.984
EDM44233.1
Hypothetical protein.
 
   0.839
EDM43805.1
Hypothetical protein.
       0.698
EDM43809.1
Putative outer membrane receptor protein.
 
 
  0.662
EDM44507.1
Hypothetical secreted protein.
    
  0.642
EDM43955.1
BNR repeat, putative.
  
 
  0.628
EDM44392.1
COG3047 Outer membrane protein W.
     
  0.620
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
     
  0.548
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.548
EDM43002.1
Polysaccharide export protein, BexD/CtrA/VexA family; COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.548
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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