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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43809.1Putative outer membrane receptor protein. (477 aa)    
Predicted Functional Partners:
EDM43810.1
Putative outer membrane protein probably involved in nutrient binding; COG3210 Large exoproteins involved in heme utilization or adhesion.
 
 
   0.956
EDM44147.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
   0.769
EDM43883.1
Hypothetical protein.
  
     0.761
EDM44888.1
Hypothetical protein.
  
     0.760
EDM43808.1
Hypothetical protein.
       0.757
EDM44295.1
Lipase (putative secreted protein); COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.754
EDM42938.1
Thermophilic serine proteinase; COG1404 Subtilisin-like serine proteases.
  
 
   0.736
EDM43243.1
CHU large protein; uncharacterized.
  
     0.720
EDM44182.1
Hypothetical protein.
  
    0.699
EDM44183.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
    0.695
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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