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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43881.1COG2815 Uncharacterized protein conserved in bacteria. (199 aa)    
Predicted Functional Partners:
EDM43882.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.794
ddl
D-alanylalanine synthetase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.693
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.683
EDM44287.1
Hypothetical protein; COG4208 ABC-type sulfate transport system, permease component.
  
     0.676
EDM44983.1
Hypothetical protein.
  
     0.637
EDM43081.1
Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
  
     0.613
EDM43759.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.608
EDM43780.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.581
EDM45417.1
COG5009 Membrane carboxypeptidase/penicillin-binding protein.
 
  
  0.570
EDM44331.1
Hypothetical protein.
  
     0.560
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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