Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43883.1Hypothetical protein. (583 aa)    
Predicted Functional Partners:
EDM43271.1
TPR repeat protein; COG4105 DNA uptake lipoprotein.
  
 0.938
EDM43811.1
Outer membrane protein; COG0419 ATPase involved in DNA repair.
 
 0.879
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
 0.843
EDM43780.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
 0.843
EDM43220.1
Outer membrane protein; COG1409 Predicted phosphohydrolases.
  
 0.843
EDM45616.1
Hypothetical protein.
  
  0.782
EDM42856.1
Hypothetical protein.
  
     0.771
EDM43809.1
Putative outer membrane receptor protein.
  
     0.761
EDM44147.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
    0.761
EDM43810.1
Putative outer membrane protein probably involved in nutrient binding; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.751
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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