Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43955.1BNR repeat, putative. (418 aa)    
Predicted Functional Partners:
EDM43956.1
COG0438 Glycosyltransferase.
       0.723
EDM43807.1
COG4206 Outer membrane cobalamin receptor protein.
  
 
  0.628
EDM44551.1
OmpA domain protein; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.625
EDM44507.1
Hypothetical secreted protein.
  
  
  0.610
EDM43806.1
Hypothetical protein.
  
 
   0.569
EDM43957.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.527
EDM43109.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 
  0.516
EDM43958.1
Hypothetical protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
       0.479
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.471
EDM43002.1
Polysaccharide export protein, BexD/CtrA/VexA family; COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.471
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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