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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43955.1BNR repeat, putative. (418 aa)    
Predicted Functional Partners:
EDM43956.1
COG0438 Glycosyltransferase.
       0.723
EDM43807.1
COG4206 Outer membrane cobalamin receptor protein.
  
 
   0.659
EDM43806.1
Hypothetical protein.
  
 
   0.638
EDM43957.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.543
EDM45311.1
Serine protease / subtilase peptidase; COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
 
   0.527
EDM45497.1
Thermolysin; COG3227 Zinc metalloprotease (elastase).
  
  0.504
EDM43958.1
Hypothetical protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
       0.479
EDM42938.1
Thermophilic serine proteinase; COG1404 Subtilisin-like serine proteases.
  
 
   0.468
EDM44149.1
Peptidase E.
  
 
   0.461
EDM43337.1
Hypothetical protein.
  
 
  0.459
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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