Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDM43992.1Tetratricopeptide repeat family protein; COG0457 FOG: TPR repeat. (380 aa)    
Predicted Functional Partners:
EDM43472.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
  
 0.977
EDM44691.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
  
 0.977
EDM42919.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
 
 0.974
EDM45097.1
Hypothetical protein.
   
 0.936
EDM44333.1
Ankyrin; COG0666 FOG: Ankyrin repeat.
   
 0.936
EDM44434.1
Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
   
 0.936
EDM45565.1
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
   
 0.936
EDM45145.1
Tetratricopeptide repeat family protein; COG0457 FOG: TPR repeat.
 
 0.906
EDM45221.1
COG0642 Signal transduction histidine kinase.
  
 0.906
secD
Protein-export membrane protein SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.889
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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