EDM44025.1 protein (unidentified eubacterium SCB49)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDM44025.1

Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase. (130 aa)

Predicted Functional Partners:

EDM44647.1

0.819

EDM44026.1

0.623

EDM43563.1

0.545

EDM43564.1

0.520

EDM44024.1

0.475

sucC

0.411

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM43563.1	EDM43564.1	SCB49_08233	SCB49_08238	COG2025 Electron transfer flavoprotein, alpha subunit.	COG2086 Electron transfer flavoprotein, beta subunit.	0.999
EDM43563.1	EDM44025.1	SCB49_08233	SCB49_10557	COG2025 Electron transfer flavoprotein, alpha subunit.	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	0.545
EDM43563.1	EDM44647.1	SCB49_08233	SCB49_13785	COG2025 Electron transfer flavoprotein, alpha subunit.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.907
EDM43563.1	sucC	SCB49_08233	SCB49_11879	COG2025 Electron transfer flavoprotein, alpha subunit.	succinate--CoA ligase, ADP-forming (succinyl-CoA synthetase, beta subunit); Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.544
EDM43564.1	EDM43563.1	SCB49_08238	SCB49_08233	COG2086 Electron transfer flavoprotein, beta subunit.	COG2025 Electron transfer flavoprotein, alpha subunit.	0.999
EDM43564.1	EDM44025.1	SCB49_08238	SCB49_10557	COG2086 Electron transfer flavoprotein, beta subunit.	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	0.520
EDM43564.1	EDM44647.1	SCB49_08238	SCB49_13785	COG2086 Electron transfer flavoprotein, beta subunit.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.923
EDM44024.1	EDM44025.1	SCB49_10552	SCB49_10557	Hypothetical protein.	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	0.475
EDM44025.1	EDM43563.1	SCB49_10557	SCB49_08233	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	COG2025 Electron transfer flavoprotein, alpha subunit.	0.545
EDM44025.1	EDM43564.1	SCB49_10557	SCB49_08238	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	COG2086 Electron transfer flavoprotein, beta subunit.	0.520
EDM44025.1	EDM44024.1	SCB49_10557	SCB49_10552	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	Hypothetical protein.	0.475
EDM44025.1	EDM44026.1	SCB49_10557	SCB49_10562	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	Hypothetical protein.	0.623
EDM44025.1	EDM44647.1	SCB49_10557	SCB49_13785	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.819
EDM44025.1	sucC	SCB49_10557	SCB49_11879	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	succinate--CoA ligase, ADP-forming (succinyl-CoA synthetase, beta subunit); Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.411
EDM44026.1	EDM44025.1	SCB49_10562	SCB49_10557	Hypothetical protein.	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	0.623
EDM44647.1	EDM43563.1	SCB49_13785	SCB49_08233	COG1250 3-hydroxyacyl-CoA dehydrogenase.	COG2025 Electron transfer flavoprotein, alpha subunit.	0.907
EDM44647.1	EDM43564.1	SCB49_13785	SCB49_08238	COG1250 3-hydroxyacyl-CoA dehydrogenase.	COG2086 Electron transfer flavoprotein, beta subunit.	0.923
EDM44647.1	EDM44025.1	SCB49_13785	SCB49_10557	COG1250 3-hydroxyacyl-CoA dehydrogenase.	Long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.	0.819
EDM44647.1	sucC	SCB49_13785	SCB49_11879	COG1250 3-hydroxyacyl-CoA dehydrogenase.	succinate--CoA ligase, ADP-forming (succinyl-CoA synthetase, beta subunit); Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.585
sucC	EDM43563.1	SCB49_11879	SCB49_08233	succinate--CoA ligase, ADP-forming (succinyl-CoA synthetase, beta subunit); Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	COG2025 Electron transfer flavoprotein, alpha subunit.	0.544