Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44071.1Hypothetical protein. (180 aa)    
Predicted Functional Partners:
EDM44070.1
COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.
       0.809
EDM43424.1
Hypothetical protein; COG2388 Predicted acetyltransferase.
  
     0.771
EDM43660.1
Hypothetical protein.
  
     0.765
EDM45251.1
COG1272 Predicted membrane protein, hemolysin III homolog.
  
     0.753
EDM43553.1
Hypothetical protein.
  
     0.753
EDM44037.1
Hypothetical protein.
  
     0.747
EDM43287.1
Hypothetical protein.
  
     0.746
EDM44304.1
COG2819 Predicted hydrolase of the alpha/beta superfamily.
  
     0.734
EDM43948.1
Hypothetical protein.
  
     0.732
EDM44570.1
Hypothetical protein.
  
     0.732
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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