Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44095.1Hypothetical protein. (270 aa)    
Predicted Functional Partners:
EDM44096.1
Hypothetical protein.
 
     0.881
EDM44094.1
Putative methyltransferase; COG0742 N6-adenine-specific methylase.
  
    0.830
EDM44097.1
COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
 
     0.767
EDM43209.1
Hypothetical protein.
  
     0.766
EDM43036.1
Hypothetical protein.
  
     0.766
EDM45278.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.745
EDM45595.1
COG1538 Outer membrane protein.
  
     0.743
EDM44531.1
Hypothetical protein.
  
     0.722
EDM45247.1
Hypothetical protein.
  
     0.703
EDM45467.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.667
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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