Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phhBCOG2154 Pterin-4a-carbinolamine dehydratase. (92 aa)    
Predicted Functional Partners:
phhA
COG3186 Phenylalanine-4-hydroxylase.
  
 0.962
EDM44488.1
Nitroreductase family protein; COG0778 Nitroreductase.
   
 
  0.757
EDM43270.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
   
 
  0.665
EDM44103.1
Hypothetical protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.647
EDM45480.1
COG3508 Homogentisate 1,2-dioxygenase.
  
  
 0.610
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
  0.572
EDM45257.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 
 0.555
EDM43586.1
phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 
 0.555
EDM45153.1
COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins.
  
  
 0.543
EDM44101.1
Hypothetical protein.
       0.521
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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