STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44120.1Putative transmembrane HD family protein; COG1480 Predicted membrane-associated HD superfamily hydrolase. (682 aa)    
Predicted Functional Partners:
EDM43264.1
Hypothetical protein.
  
  
 0.712
EDM43419.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.648
dacA
Putative transmembrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.606
EDM44118.1
Lipoprotein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
       0.577
EDM44119.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.524
EDM45057.1
TPR domain protein; COG0457 FOG: TPR repeat.
  
 
   0.450
EDM44090.1
Hypothetical protein.
 
 
   0.440
EDM43030.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.433
EDM45579.1
Hypothetical protein; COG0306 Phosphate/sulphate permeases.
  
     0.416
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.412
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.