STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44128.1Periplasmic sensor signal transduction histidine kinase; COG0591 Na+/proline symporter. (896 aa)    
Predicted Functional Partners:
EDM45534.1
Hybrid sensory kinase; COG0642 Signal transduction histidine kinase.
 
0.983
EDM45221.1
COG0642 Signal transduction histidine kinase.
   
 0.969
EDM44982.1
Transcriptional regulator, sigma-54-related protein; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
   
 0.967
EDM44127.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 0.965
EDM44338.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
   
 0.911
EDM43866.1
Two-component system sensor histidine kinase; COG0642 Signal transduction histidine kinase.
   
 0.911
EDM44132.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.880
EDM42881.1
Sensor histidine kinase/GAF domain hybrid protein; COG2203 FOG: GAF domain.
   
 0.876
EDM45173.1
Sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
  
 0.856
EDM44133.1
Hypothetical protein; COG3677 Transposase and inactivated derivatives.
 
     0.850
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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