STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDM44130.1Sodium:solute symporter family protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (568 aa)    
Predicted Functional Partners:
EDM44131.1
COG4327 Predicted membrane protein.
 
    0.945
EDM44132.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.724
EDM44125.1
Propionyl CoA synthase; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
  
  
 0.622
EDM44124.1
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
  
  
 0.618
EDM44128.1
Periplasmic sensor signal transduction histidine kinase; COG0591 Na+/proline symporter.
  
    0.555
EDM44129.1
Hypothetical protein.
       0.495
EDM44133.1
Hypothetical protein; COG3677 Transposase and inactivated derivatives.
       0.459
EDM44127.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.448
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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