STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44132.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (397 aa)    
Predicted Functional Partners:
EDM44133.1
Hypothetical protein; COG3677 Transposase and inactivated derivatives.
 
     0.894
EDM44128.1
Periplasmic sensor signal transduction histidine kinase; COG0591 Na+/proline symporter.
 
     0.880
EDM44131.1
COG4327 Predicted membrane protein.
       0.796
EDM44127.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.752
EDM44130.1
Sodium:solute symporter family protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.724
EDM43619.1
Hypothetical protein; COG4929 Uncharacterized membrane-anchored protein.
  
     0.542
EDM43618.1
COG4872 Predicted membrane protein.
  
     0.535
EDM44183.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.504
EDM44182.1
Hypothetical protein.
  
     0.499
EDM44346.1
Hypothetical protein.
  
     0.461
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.