STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44133.1Hypothetical protein; COG3677 Transposase and inactivated derivatives. (139 aa)    
Predicted Functional Partners:
EDM44132.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.894
EDM44128.1
Periplasmic sensor signal transduction histidine kinase; COG0591 Na+/proline symporter.
 
     0.850
EDM44127.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.781
EDM44131.1
COG4327 Predicted membrane protein.
       0.517
EDM44030.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.494
EDM44130.1
Sodium:solute symporter family protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.459
EDM44134.1
Putative two-component system response regulator; COG3279 Response regulator of the LytR/AlgR family.
       0.425
EDM44135.1
Signaling protein without kinase domain; COG3275 Putative regulator of cell autolysis.
       0.425
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.