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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44143.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (789 aa)    
Predicted Functional Partners:
EDM44145.1
Hypothetical protein.
 
     0.919
EDM44925.1
Hypothetical protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
  
     0.735
EDM44138.1
Putative outer membrane lipoprotein precursor; COG1538 Outer membrane protein.
 
    0.697
EDM44144.1
Hypothetical protein; COG0130 Pseudouridine synthase.
       0.666
EDM43393.1
Putative transcription regulator; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
 
     0.596
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  0.588
EDM45683.1
Hypothetical protein.
   
  0.588
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
  0.588
EDM43980.1
Ferric uptake regulator, FUR family protein; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
 
     0.567
EDM43313.1
Hypothetical protein.
  
 
   0.529
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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