STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42878.1COG5337 Spore coat assembly protein. (772 aa)    
Predicted Functional Partners:
EDM42918.1
CHU large protein; uncharacterized.
  
     0.766
EDM42876.1
Putative orphan protein.
  
     0.753
EDM44507.1
Hypothetical secreted protein.
  
     0.750
EDM45621.1
CHU large protein; uncharacterized.
  
     0.719
EDM43537.1
Thrombospondin type 3 repeat family protein/Calx-beta domain protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
    0.684
EDM43134.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin; COG1404 Subtilisin-like serine proteases.
  
     0.594
EDM44346.1
Hypothetical protein.
  
    0.582
EDM42879.1
Hypothetical protein.
       0.576
EDM45399.1
Putative outer membrane protein, probably involved in nutrient binding.
  
    0.575
EDM42919.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.572
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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