STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42887.1Hypothetical protein. (184 aa)    
Predicted Functional Partners:
EDM42888.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.939
EDM42890.1
Hypothetical protein.
       0.651
EDM42889.1
Hypothetical protein.
       0.649
EDM42891.1
Hypothetical protein.
       0.649
EDM43392.1
COG1538 Outer membrane protein.
  
     0.508
EDM42892.1
Hypothetical protein.
       0.484
EDM43390.1
HlyB/MsbA family ABC transporter; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
     0.461
EDM43389.1
Hypothetical protein; COG1309 Transcriptional regulator.
  
     0.460
EDM43391.1
COG0845 Membrane-fusion protein.
  
     0.409
EDM43745.1
Hypothetical protein.
  
     0.409
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.