STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42891.1Hypothetical protein. (163 aa)    
Predicted Functional Partners:
EDM42890.1
Hypothetical protein.
 
     0.845
EDM42889.1
Hypothetical protein.
       0.773
EDM43024.1
COG0308 Aminopeptidase N.
  
     0.703
EDM44984.1
Hypothetical protein.
  
     0.692
EDM44081.1
Ribonuclease Z.
  
     0.689
EDM42888.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.689
EDM45467.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.673
EDM42892.1
Hypothetical protein.
 
     0.668
EDM42887.1
Hypothetical protein.
       0.649
EDM45581.1
COG2849 Uncharacterized protein conserved in bacteria.
  
     0.640
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.