STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42925.1COG4775 Outer membrane protein/protective antigen OMA87. (1172 aa)    
Predicted Functional Partners:
EDM42922.1
Hypothetical protein.
 
     0.861
EDM43219.1
Hypothetical protein; COG1418 Predicted HD superfamily hydrolase.
 
     0.776
EDM43009.1
Hypothetical protein.
  
     0.773
EDM43218.1
Hypothetical protein.
 
     0.757
EDM43052.1
Hypothetical protein.
  
  
  0.751
EDM42924.1
Ferredoxin-dependent glutamate synthase; COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
     0.734
EDM42923.1
Hypothetical protein.
       0.697
EDM43002.1
Polysaccharide export protein, BexD/CtrA/VexA family; COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.663
EDM44651.1
Hypothetical protein; COG0535 Predicted Fe-S oxidoreductases.
  
  
  0.652
EDM44507.1
Hypothetical secreted protein.
   
 
  0.647
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.