Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42929.1Hypothetical protein; COG0534 Na+-driven multidrug efflux pump. (355 aa)    
Predicted Functional Partners:
EDM42930.1
Putative aminoacyl-histidine dipeptidase; COG2195 Di- and tripeptidases.
       0.576
EDM43305.1
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
  
     0.548
EDM45603.1
Hypothetical protein; COG3577 Predicted aspartyl protease.
  
     0.535
EDM43030.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.519
EDM43452.1
Putative lipopolysaccharide biosynthesis-related protein; COG1778 Low specificity phosphatase (HAD superfamily).
     
  0.517
EDM43287.1
Hypothetical protein.
  
     0.512
EDM44162.1
Hypothetical protein.
  
     0.484
EDM44721.1
Hypothetical protein.
  
     0.483
EDM45207.1
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.463
EDM45251.1
COG1272 Predicted membrane protein, hemolysin III homolog.
  
     0.461
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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