STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42935.1Gliding motility-related protein; possible outer membrane protein. (213 aa)    
Predicted Functional Partners:
EDM45273.1
Hypothetical protein.
  
 
 
 0.949
EDM43780.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
   
 0.767
EDM43076.1
Hypothetical protein.
  
   
 0.762
EDM45298.1
Hypothetical protein.
  
    0.760
EDM42941.1
Putative transmembrane permease; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
 
 
 
 0.751
EDM43195.1
Hypothetical protein.
  
     0.747
EDM43339.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.745
EDM43080.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
    
   0.741
EDM44037.1
Hypothetical protein.
  
     0.739
EDM45305.1
Hypothetical protein; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
 
 
 
 0.737
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.