Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43179.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
EDM43178.1
Putative outermembrane protein.
       0.773
EDM44269.1
COG2124 Cytochrome P450.
   
  0.716
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.697
EDM45565.1
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
  
 
  0.677
EDM43180.1
Hypothetical protein.
       0.664
EDM43971.1
Putative O-succinylbenzoate--CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.656
EDM44499.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.656
EDM42938.1
Thermophilic serine proteinase; COG1404 Subtilisin-like serine proteases.
  
  
  0.647
EDM44333.1
Ankyrin; COG0666 FOG: Ankyrin repeat.
  
 
  0.644
EDM45309.1
Sodium/hydrogen exchanger; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
    
  0.605
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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