STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43205.1Two-component system response regulator protein; COG3279 Response regulator of the LytR/AlgR family. (237 aa)    
Predicted Functional Partners:
EDM44459.1
Possible sensor protein; COG0457 FOG: TPR repeat.
 
  0.828
EDM44460.1
Putative two-component regulator sensor kinase; COG0457 FOG: TPR repeat.
 
  0.828
EDM45242.1
Possible sensor protein; COG0457 FOG: TPR repeat.
  
  0.828
EDM44135.1
Signaling protein without kinase domain; COG3275 Putative regulator of cell autolysis.
 
  0.828
EDM42857.1
Two-component sensor histidine kinase; COG3275 Putative regulator of cell autolysis.
 
  0.827
EDM44681.1
Hypothetical protein; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
  
  0.827
EDM44461.1
GGDEF domain protein; COG3292 Predicted periplasmic ligand-binding sensor domain.
  
  0.821
EDM45685.1
Possible sensor protein; COG0457 FOG: TPR repeat.
 
  0.816
EDM44399.1
Histidine kinase DhkJ; COG3292 Predicted periplasmic ligand-binding sensor domain.
  
  0.773
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.483
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.