Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpmE250S ribosomal protein L31 type B; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (177 aa)    
Predicted Functional Partners:
EDM43213.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.778
EDM44075.1
Hypothetical protein.
 
     0.541
EDM43212.1
COG1109 Phosphomannomutase.
       0.541
EDM45595.1
COG1538 Outer membrane protein.
  
     0.535
EDM44531.1
Hypothetical protein.
  
     0.505
EDM45055.1
Hypothetical protein.
  
     0.503
EDM45041.1
Hypothetical protein; COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain).
  
     0.493
EDM44095.1
Hypothetical protein.
  
     0.491
EDM45449.1
Transcriptional regulator; COG0457 FOG: TPR repeat.
  
     0.425
EDM43301.1
Putative S1/P1 Nuclease; COG0178 Excinuclease ATPase subunit.
  
     0.421
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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