STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43220.1Outer membrane protein; COG1409 Predicted phosphohydrolases. (1242 aa)    
Predicted Functional Partners:
EDM43271.1
TPR repeat protein; COG4105 DNA uptake lipoprotein.
  
 0.905
EDM43219.1
Hypothetical protein; COG1418 Predicted HD superfamily hydrolase.
 
     0.892
EDM45583.1
Outer membrane lipoprotein, putative; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
 0.843
EDM43883.1
Hypothetical protein.
  
 0.843
EDM43218.1
Hypothetical protein.
 
     0.808
EDM43009.1
Hypothetical protein.
  
     0.775
EDM42922.1
Hypothetical protein.
 
     0.740
EDM43076.1
Hypothetical protein.
 
  
 0.735
EDM44310.1
Hypothetical protein.
  
 
   0.720
EDM43771.1
Hypothetical protein; COG2319 FOG: WD40 repeat.
 
     0.693
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.