Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43221.1Outer membrane protein; COG2831 Hemolysin activation/secretion protein. (1209 aa)    
Predicted Functional Partners:
EDM43219.1
Hypothetical protein; COG1418 Predicted HD superfamily hydrolase.
  
     0.774
EDM43009.1
Hypothetical protein.
  
     0.774
EDM43052.1
Hypothetical protein.
  
  
  0.749
EDM43218.1
Hypothetical protein.
  
     0.742
EDM42922.1
Hypothetical protein.
  
     0.738
EDM44651.1
Hypothetical protein; COG0535 Predicted Fe-S oxidoreductases.
  
  
  0.676
EDM43002.1
Polysaccharide export protein, BexD/CtrA/VexA family; COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.669
EDM44507.1
Hypothetical secreted protein.
   
 
  0.647
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
     
  0.645
EDM43220.1
Outer membrane protein; COG1409 Predicted phosphohydrolases.
  
  
 
0.621
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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