STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43242.1Capsular polysaccharide biosynthsis protein; COG0438 Glycosyltransferase. (115 aa)    
Predicted Functional Partners:
EDM42989.1
Probable galactosyl transferase; COG0438 Glycosyltransferase.
 
      0.888
EDM43238.1
Putative lipopolysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.647
EDM43239.1
Sulfotransferase; COG0457 FOG: TPR repeat.
   
   0.620
EDM43237.1
COG0110 Acetyltransferase (isoleucine patch superfamily).
  
    0.594
EDM43240.1
COG0110 Acetyltransferase (isoleucine patch superfamily).
  
    0.594
EDM43241.1
Hypothetical protein.
  
    0.594
EDM43236.1
Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
       0.588
EDM43230.1
COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
  0.562
EDM43231.1
Putative glucose-1-phosphate thymidyl transferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
 
  0.539
EDM42975.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.526
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.