Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42990.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
EDM42991.1
COG0438 Glycosyltransferase.
       0.773
EDM42994.1
Probable beta-glycosyltransferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
  0.675
EDM42989.1
Probable galactosyl transferase; COG0438 Glycosyltransferase.
 
     0.643
EDM42992.1
COG0438 Glycosyltransferase.
       0.615
EDM42993.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.615
EDM42995.1
Putative lipopolysaccharide biosynthesis protein; COG0438 Glycosyltransferase.
       0.615
EDM42996.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
       0.546
phhB
COG2154 Pterin-4a-carbinolamine dehydratase.
     
  0.512
EDM43239.1
Sulfotransferase; COG0457 FOG: TPR repeat.
 
     0.505
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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