STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42993.1Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. (359 aa)    
Predicted Functional Partners:
EDM42992.1
COG0438 Glycosyltransferase.
  
    0.778
EDM42994.1
Probable beta-glycosyltransferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.778
EDM42995.1
Putative lipopolysaccharide biosynthesis protein; COG0438 Glycosyltransferase.
  
    0.778
EDM42996.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
  
    0.690
EDM42991.1
COG0438 Glycosyltransferase.
  
    0.625
EDM42990.1
Hypothetical protein.
       0.615
EDM42998.1
Putative undecaprenyl-phosphate glycosyl-1-phosphate transferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.583
EDM42951.1
COG0395 ABC-type sugar transport system, permease component.
  
  
 0.541
EDM45370.1
Glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.541
EDM43001.1
Putative capsular polysaccharide biosynthesis protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
    0.519
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.