Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43005.1Hypothetical protein. (394 aa)    
Predicted Functional Partners:
EDM44663.1
COG1239 Mg-chelatase subunit ChlI.
  
 0.789
EDM43004.1
Hypothetical protein.
       0.773
EDM43006.1
COG2509 Uncharacterized FAD-dependent dehydrogenases.
       0.773
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
    
  0.729
EDM45257.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 
  0.698
EDM43586.1
phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 
  0.698
EDM44325.1
Conserved repeat domain; COG2759 Formyltetrahydrofolate synthetase.
  
     0.649
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.646
EDM43420.1
COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.639
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.623
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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