STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43013.1Permease family protein; COG0701 Predicted permeases. (324 aa)    
Predicted Functional Partners:
EDM43015.1
COG0526 Thiol-disulfide isomerase and thioredoxins.
 
   
 0.959
EDM43014.1
COG1765 Predicted redox protein, regulator of disulfide bond formation.
 
     0.811
EDM43016.1
Putative transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators.
     
 0.691
EDM43011.1
Hypothetical protein.
       0.425
EDM43012.1
Hypothetical protein; COG4177 ABC-type branched-chain amino acid transport system, permease component.
       0.425
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.