STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43027.1Hypothetical protein; COG0457 FOG: TPR repeat. (324 aa)    
Predicted Functional Partners:
EDM43028.1
Alginate O-acetylation protein; COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family.
  
    0.782
EDM43026.1
Hypothetical protein.
       0.773
EDM44647.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
     
 0.636
EDM43025.1
Hypothetical protein; COG1611 Predicted Rossmann fold nucleotide-binding protein; Belongs to the LOG family.
       0.592
EDM43315.1
CheA Signal Transduction Histidine Kinases (STHK); COG3210 Large exoproteins involved in heme utilization or adhesion.
   
  0.491
EDM43605.1
Hypothetical protein.
   
  0.491
EDM43610.1
Putative phage tail protein.
   
  0.491
EDM44652.1
Probable extracellular nuclease; COG3210 Large exoproteins involved in heme utilization or adhesion.
   
  0.491
EDM43029.1
Aminopeptidase; COG1363 Cellulase M and related proteins.
       0.435
EDM43023.1
Hypothetical protein.
       0.432
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.