Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43051.1FG-GAP repeat protein. (572 aa)    
Predicted Functional Partners:
EDM43052.1
Hypothetical protein.
  
 
  0.870
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.773
EDM44183.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
    0.724
EDM44182.1
Hypothetical protein.
  
    0.718
EDM45563.1
Hypothetical protein.
  
     0.674
EDM44346.1
Hypothetical protein.
  
     0.666
EDM44387.1
Regulatory P domain of the subtilisin-like proprotein convertases and other protease.
  
  
  0.638
EDM43646.1
COG2957 Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family.
  
    0.622
EDM45241.1
Hypothetical protein.
  
     0.578
EDM43054.1
Hypothetical protein; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
  
    0.571
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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