Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43069.1Hypothetical protein; COG0500 SAM-dependent methyltransferases. (391 aa)    
Predicted Functional Partners:
EDM43070.1
Hypothetical protein; COG0628 Predicted permease.
  
    0.790
EDM44448.1
Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases.
  
     0.635
EDM44646.1
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
  
     0.595
EDM45188.1
Hypothetical protein.
  
     0.590
EDM43072.1
Hypothetical protein.
       0.570
EDM43071.1
SpoU rRNA methylase family protein; COG0566 rRNA methylases.
       0.568
EDM44339.1
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.539
sdhA
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
     
  0.539
EDM43367.1
Probable transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.
     
  0.516
EDM45717.1
COG0789 Predicted transcriptional regulators.
     
  0.516
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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