Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43079.1Hypothetical protein; COG1452 Organic solvent tolerance protein OstA. (904 aa)    
Predicted Functional Partners:
EDM43912.1
Hypothetical protein; COG0795 Predicted permeases.
 
 
 0.827
EDM42934.1
Hypothetical protein; COG0795 Predicted permeases.
 
 
 0.771
EDM45278.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.746
EDM43746.1
COG0222 Ribosomal protein L7/L12.
  
  
  0.735
EDM44507.1
Hypothetical secreted protein.
  
  
 0.734
EDM43376.1
ABC transporter, ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
 
 0.708
EDM44661.1
ABC transporter ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
 
 0.708
EDM43426.1
Oligopeptide ABC transporter, solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
     
 0.699
EDM45285.1
Multiple sugar-binding ABC transporter, ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
     
  0.687
EDM44039.1
Hypothetical protein; COG2317 Zn-dependent carboxypeptidase.
  
     0.682
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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