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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43081.1Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (315 aa)    
Predicted Functional Partners:
EDM44212.1
Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 0.999
EDM44213.1
ABC transporter, ATP-binding protein; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 0.995
EDM43082.1
Possible oxidoreductase, Fe-S subunit; COG0247 Fe-S oxidoreductase.
       0.792
EDM43080.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
 
     0.695
EDM44322.1
Outer membrane protein, OmpA family; COG1196 Chromosome segregation ATPases.
 
 
   0.676
EDM43488.1
Putative flagellar motor protein MotB; COG1196 Chromosome segregation ATPases.
   
   0.634
EDM44533.1
COG1360 Flagellar motor protein.
   
   0.634
EDM43881.1
COG2815 Uncharacterized protein conserved in bacteria.
  
     0.613
EDM45285.1
Multiple sugar-binding ABC transporter, ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
    
  0.574
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
 
    0.534
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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