Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDM44494.1Putative regulatory protein (nitrile hydratase activator like); COG0523 Putative GTPases (G3E family). (399 aa)    
Predicted Functional Partners:
EDM44497.1
Hypothetical protein.
 
    0.816
EDM44496.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.812
map
Putative methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.811
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.767
EDM44495.1
ABC transporter related protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
    0.742
EDM45456.1
Zinc ABC transporter, periplasmic zinc-binding protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.678
EDM45495.1
Putative regulatory protein; COG1734 DnaK suppressor protein.
  
  
 0.648
EDM44493.1
Hypothetical protein; COG3211 Predicted phosphatase.
 
     0.635
rpmB
COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.613
folE-3
COG0302 GTP cyclohydrolase I.
     
 0.527
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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